(EPI)TRANSCRIPTOMIC CORE UNIT
-
The (Epi)Transcriptomic core unit in IPEK houses a complete next-generation sequencing (NGS) workflow and bioinformatic expertise supporting a wide range of methods such as transcriptome sequencing, single-cell profiling, and epigenome applications. This unit operates an Illumina NextSeq sequencing system, the 10X genomics Chromium X controller for single-cell resolution, as well as equipment for chromatin/RNA shearing (Bioruptor Pico) and quality-check of input samples and DNA libraries.
The main applications include:
- Stranded mRNA sequencing
- -Stranded total RNA sequencing
- -Small RNA sequencing
- -Chromatin Immunoprecipitation and sequencing (ChIP-seq)
- -Single-cell genomic applications (e.g., scRNAseq)
-
TEAM MEMBERS
Donato Santovito, MD PhDPrincipal InvestigatorVasiliki TriantafyllidouBioinformaticianÖgcläloleKplgubgwјääldmüfvSimeävWf-miBatoul BayerM. Sc. studentjgbüfä jgјipvimsävf-mi